Check the preview of 2nd version of this platform
being developed by the open MLCommons taskforce on automation and reproducibility
as a free, open-source and technology-agnostic on-prem platform.
Using Causal Discovery to Track Information Flow in Spatio-Temporal Data - A Testbed and Experimental Results Using Advection-Diffusion Simulations
lib:0e44bfd7be548b29 (v1.0.0)
Authors: Imme Ebert-Uphoff,Yi Deng
ArXiv: 1512.08279
Document: PDF DOI
Abstract URL: http://arxiv.org/abs/1512.08279v1
Causal discovery algorithms based on probabilistic graphical models have emerged in geoscience applications for the identification and visualization of dynamical processes. The key idea is to learn the structure of a graphical model from observed spatio-temporal data, which indicates information flow, thus pathways of interactions, in the observed physical system. Studying those pathways allows geoscientists to learn subtle details about the underlying dynamical mechanisms governing our planet. Initial studies using this approach on real-world atmospheric data have shown great potential for scientific discovery. However, in these initial studies no ground truth was available, so that the resulting graphs have been evaluated only by whether a domain expert thinks they seemed physically plausible. This paper seeks to fill this gap. We develop a testbed that emulates two dynamical processes dominant in many geoscience applications, namely advection and diffusion, in a 2D grid. Then we apply the causal discovery based information tracking algorithms to the simulation data to study how well the algorithms work for different scenarios and to gain a better understanding of the physical meaning of the graph results, in particular of instantaneous connections. We make all data sets used in this study available to the community as a benchmark. Keywords: Information flow, graphical model, structure learning, causal discovery, geoscience.
ArXiv: 1512.08279
Document: PDF DOI
Abstract URL: http://arxiv.org/abs/1512.08279v1
Causal discovery algorithms based on probabilistic graphical models have emerged in geoscience applications for the identification and visualization of dynamical processes. The key idea is to learn the structure of a graphical model from observed spatio-temporal data, which indicates information flow, thus pathways of interactions, in the observed physical system. Studying those pathways allows geoscientists to learn subtle details about the underlying dynamical mechanisms governing our planet. Initial studies using this approach on real-world atmospheric data have shown great potential for scientific discovery. However, in these initial studies no ground truth was available, so that the resulting graphs have been evaluated only by whether a domain expert thinks they seemed physically plausible. This paper seeks to fill this gap. We develop a testbed that emulates two dynamical processes dominant in many geoscience applications, namely advection and diffusion, in a 2D grid. Then we apply the causal discovery based information tracking algorithms to the simulation data to study how well the algorithms work for different scenarios and to gain a better understanding of the physical meaning of the graph results, in particular of instantaneous connections. We make all data sets used in this study available to the community as a benchmark. Keywords: Information flow, graphical model, structure learning, causal discovery, geoscience.
Relevant initiatives
Related knowledge about this paper
Reproduced results (crowd-benchmarking and competitions)
Artifact and reproducibility checklists
- ACM/cTuning artifact appendix and reproducibility checklist
- NeurIPS reproducibility checklist
- SIGPLAN's checklist for empirical evaluation
- Collective Knowledge (organizing research projects based on FAIR principles)